| Round | Overall | Player |
|---|---|---|
| 1 | 1st | OF Ken Griffey Jr Sea |
| 2 | 24th | OF Juan Gonzalez Tex |
| 3 | 25th | SS Barry Larkin Cin |
| 4 | 48th | P Tom Glavine Atl |
| 5 | 49th | P Kevin Appier KC |
| 6 | 72nd | P Jeff Montgomery KC |
| 7 | 73rd | P Alex Fernandez Fla |
| 8 | 96th | 1B Will Clark Tex |
| 9 | 97th | C Chris Hoiles Bal |
| 10 | 120th | P Chuck Finley Ana |
| 11 | 121st | P Mel Rojas NYN |
| 12 | 144th | 2B Quilvio Veras SD |
| 13 | 145th | OF Greg Vaughn SD |
| 14 | 168th | P Andy Pettitte NYA |
| 15 | 169th | OF Brian McRae NYN |
| 16 | 192nd | OF Darren Daulton Fla |
| 17 | 193rd | P Aaron Sele Bos |
| 18 | 216th | P Brad Radke Min |
| 19 | 217th | 1B Hal Morris Cin |
| 20 | 240th | 3B Tim Naehring Bos |
| 21 | 241st | P Todd Van Poppel Ana |
| 22 | 264th | 3B Charlie Hayes NYA |
| 23 | 265th | P Kevin Ritz Col |
| 24 | 288th | 3B Dave Hollins Ana |
| 25 | 289th | P Darryl Kile Hou |
| 26 | 312th | P Pete Harnisch Mil |