| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | SP Pedro Martinez Bos |
| 2 | 23rd | OF Brian S. Giles Pit |
| 3 | 26th | 1B Mark McGwire StL |
| 4 | 47th | 1B Rafael Palmeiro Tex |
| 5 | 50th | 3B Jeff Cirillo Col |
| 6 | 71st | OF Moises Alou Hou |
| 7 | 74th | SS Nomar Garciaparra Bos |
| 8 | 95th | 3B Phil Nevin SD |
| 9 | 98th | SP Ryan Dempster Fla |
| 10 | 119th | OF Luis Gonzalez Ari |
| 11 | 122nd | RP Todd Jones Det |
| 12 | 143rd | 2B Todd Walker Col |
| 13 | 146th | RP Jeff Shaw LA |
| 14 | 167th | OF Ben Grieve TB |
| 15 | 170th | SP Jon Lieber ChN |
| 16 | 191st | SP Pete Harnisch Cin |
| 17 | 194th | SS Rich Aurilia SF |
| 18 | 215th | SP Brian Anderson Ari |
| 19 | 218th | SP Kenny Rogers Tex |
| 20 | 239th | RP Mike Williams Pit |
| 21 | 242nd | C Brook Fordyce Bal |
| 22 | 263rd | SS Ricky Gutierrez ChN |
| 23 | 266th | OF Jose Valentin ChA |
| 24 | 287th | 2B Ron Belliard Mil |
| 25 | 290th | SP Paul Wilson TB |
| 26 | 311th | OF Roger Cedeno Det |
| 27 | 314th | SP Cal Eldred ChA |
| 28 | 335th | C Tyler Houston Mil |
| 29 | 338th | OF Glenallen Hill Ana |