| Round | Overall | Player |
|---|---|---|
| 1 | 6th | C Mike Piazza NYN |
| 2 | 19th | OF Barry Bonds SF |
| 3 | 30th | 1B Mike Sweeney KC |
| 4 | 43rd | SP Bartolo Colon Cle |
| 5 | 54th | OF Shawn Green LA |
| 6 | 67th | SP David Wells ChA |
| 7 | 78th | SS Barry Larkin Cin |
| 8 | 91st | RP Jason Isringhausen Oak |
| 9 | 102nd | 3B Robin Ventura NYN |
| 10 | 115th | SP Kevin Millwood Atl |
| 11 | 126th | OF Carlos Lee ChA |
| 12 | 139th | 2B Quilvio Veras Atl |
| 13 | 150th | RP Tim Crabtree Tex |
| 14 | 163rd | OF Jeffrey Hammonds Mil |
| 15 | 174th | SP Brad Radke Min |
| 16 | 187th | SP Robert Person Phi |
| 17 | 198th | 1B J.T. Snow SF |
| 18 | 211th | C Damian Miller Ari |
| 19 | 222nd | SS Julio Lugo Hou |
| 20 | 235th | OF Dante Bichette Bos |
| 21 | 246th | SP Ryan Kohlmeier Bal |
| 22 | 259th | SP Tony Armas Jr. Mon |
| 23 | 270th | OF Mike Cameron Sea |
| 24 | 283rd | 3B Chris Truby Hou |
| 25 | 294th | SP Hideo Nomo Bos |
| 26 | 307th | 2B Adam Kennedy Ana |
| 27 | 318th | 2B Luis Rivas Min |
| 28 | 331st | SP Elmer Dessens Cin |
| 29 | 342nd | 1B Rico Brogna Atl |