| Round | Overall | Player |
|---|---|---|
| 1 | 7th | 1B Jeff Bagwell Hou |
| 2 | 18th | 2B Jeff Kent SF |
| 3 | 31st | OF Bernie Williams NYA |
| 4 | 42nd | SP Al Leiter NYN |
| 5 | 55th | RP Armando Benitez NYN |
| 6 | 66th | C Todd Hundley ChN |
| 7 | 79th | SP Livan Hernandez SF |
| 8 | 90th | 3B Mike Lowell Fla |
| 9 | 103rd | SP Javier Vazquez Mon |
| 10 | 114th | OF Bob Higginson Det |
| 11 | 127th | SS Omar Vizquel Cle |
| 12 | 138th | OF Rusty Greer Tex |
| 13 | 151st | SP Russ Ortiz SF |
| 14 | 162nd | 1B Tony Clark Det |
| 15 | 175th | SP Pat Hentgen Bal |
| 16 | 186th | 2B Mark Grudzielanek LA |
| 17 | 199th | SP Shane Reynolds Hou |
| 18 | 210th | 3B Michael Barrett Mon |
| 19 | 223rd | OF Ray Lankford StL |
| 20 | 234th | C Bobby Estalella SF |
| 21 | 247th | OF B.J. Surhoff Atl |
| 22 | 258th | SP Brian Moehler Det |
| 23 | 271st | SS Royce Clayton ChA |
| 24 | 282nd | OF Paul O'Neill NYA |
| 25 | 295th | SP Bobby J. Jones SD |
| 26 | 306th | SP Esteban Loaiza Tor |
| 27 | 319th | RP Shigetoshi Hasegawa Ana |
| 28 | 330th | 3B Scott Brosius NYA |
| 29 | 343rd | SP Chris Holt Det |