| Round | Overall | Player |
|---|---|---|
| 1 | 10th | SP Randy Johnson Ari |
| 2 | 15th | OF Magglio Ordonez ChA |
| 3 | 34th | 2B Roberto Alomar NYN |
| 4 | 39th | 3B Fernando Tatis Mon |
| 5 | 58th | RP Trevor Hoffman SD |
| 6 | 63rd | RP Keith Foulke ChA |
| 7 | 82nd | OF Jermaine Dye KC |
| 8 | 87th | 1B Pat Burrell Phi |
| 9 | 106th | OF Shannon Stewart Tor |
| 10 | 111th | SP Rick Helling Tex |
| 11 | 130th | RP John Smoltz Atl |
| 12 | 135th | RP Roberto Hernandez KC |
| 13 | 154th | 1B Ryan Klesko SD |
| 14 | 159th | DH Brad Fullmer Tor |
| 15 | 178th | 1B Eric Karros LA |
| 16 | 183rd | SP Rick Reed NYN |
| 17 | 202nd | SP Ben Sheets Mil |
| 18 | 207th | 3B Dean Palmer Det |
| 19 | 226th | OF Todd Hollandsworth Col |
| 20 | 231st | OF Terrence Long Oak |
| 21 | 250th | C Mitch Meluskey Det |
| 22 | 255th | C Ramon Hernandez Oak |
| 23 | 274th | SS Cristian Guzman Min |
| 24 | 279th | 2B Carlos Febles KC |
| 25 | 298th | SS Damian Jackson SD |
| 26 | 303rd | OF Juan Pierre Col |
| 27 | 322nd | SP Mike Sirotka Tor |
| 28 | 327th | SP Jeff Suppan KC |
| 29 | 346th | 3B Tony Fernandez Mil |