| Round | Overall | Player |
|---|---|---|
| 1 | 12th | OF Andruw Jones Atl |
| 2 | 13th | SS Derek Jeter NYA |
| 3 | 36th | SP Chan Ho Park LA |
| 4 | 37th | OF Darin Erstad Ana |
| 5 | 60th | 3B Phil Nevin SD |
| 6 | 61st | SP Curt Schilling Ari |
| 7 | 84th | OF Preston Wilson Fla |
| 8 | 85th | C Javy Lopez Atl |
| 9 | 108th | SP Kerry Wood ChN |
| 10 | 109th | RP Jeff Shaw LA |
| 11 | 132nd | 1B Paul Konerko ChA |
| 12 | 133rd | SP Darren Dreifort LA |
| 13 | 156th | 2B Jose Ortiz Oak |
| 14 | 157th | SP Eric Milton Min |
| 15 | 180th | RP Jose Jimenez Col |
| 16 | 181st | OF Jose Valentin ChA |
| 17 | 204th | 1B Eric Karros LA |
| 18 | 205th | C Ramon Hernandez Oak |
| 19 | 228th | SS Cristian Guzman Min |
| 20 | 229th | SP Albie Lopez TB |
| 21 | 252nd | 2B Mark Grudzielanek LA |
| 22 | 253rd | RP Wade Miller Hou |
| 23 | 276th | SP Rob Bell Cin |
| 24 | 277th | SP Omar Daal Phi |
| 25 | 300th | OF Roger Cedeno Det |
| 26 | 301st | SP Bryan Rekar TB |
| 27 | 324th | 3B Bill Mueller ChN |
| 28 | 325th | SP Brian Bohanon Col |
| 29 | 348th | OF Derek Bell Pit |