| Round | Overall | Player |
|---|---|---|
| 1 | 11th | OF Manny Ramirez Bos |
| 2 | 14th | 3B Chipper Jones Atl |
| 3 | 35th | 1B Jim Thome Cle |
| 4 | 38th | 2B Jose Vidro Mon |
| 5 | 59th | SP Tom Glavine Atl |
| 6 | 62nd | SP Darryl Kile StL |
| 7 | 83rd | SS Barry Larkin Cin |
| 8 | 86th | C Todd Hundley ChN |
| 9 | 107th | RP Troy Percival Ana |
| 10 | 110th | SP Freddy Garcia Sea |
| 11 | 131st | OF Kenny Lofton Cle |
| 12 | 134th | SP Aaron Sele Sea |
| 13 | 155th | 3B Robin Ventura NYN |
| 14 | 158th | DH Brad Fullmer Tor |
| 15 | 179th | SP Bruce Chen Phi |
| 16 | 182nd | OF Rusty Greer Tex |
| 17 | 203rd | RP Tom Gordon ChN |
| 18 | 206th | OF Jose Cruz Jr Tor |
| 19 | 227th | C Bobby Estalella SF |
| 20 | 230th | OF Ray Lankford StL |
| 21 | 251st | SP Pedro Astacio Col |
| 22 | 254th | SP Ryan Kohlmeier Bal |
| 23 | 275th | SP Chuck Smith Fla |
| 24 | 278th | OF Mike Cameron Sea |
| 25 | 299th | SP Ramiro Mendoza NYA |
| 26 | 302nd | OF Todd Hollandsworth Col |
| 27 | 323rd | SS Mark Loretta Mil |
| 28 | 326th | 2B Adam Kennedy Ana |
| 29 | 347th | 2B Brent Abernathy TB |