| Round | Overall | Player |
|---|---|---|
| 1 | 10th |
3B
Chipper Jones
|
| 2 | 15th |
1B
Jason Giambi
|
| 3 | 34th |
OF
Juan Gonzalez
|
| 4 | 39th |
SP
Bartolo Colon
|
| 5 | 58th |
C
Jorge Posada
|
| 6 | 63rd |
OF
Johnny Damon
|
| 7 | 82nd |
1B
Jim Thome
|
| 8 | 87th |
OF
Geoff Jenkins
|
| 9 | 106th |
SS
Barry Larkin
|
| 10 | 111th |
RP
Danny Graves
|
| 11 | 130th |
RP
John Smoltz
|
| 12 | 135th |
SP
Jeff D'Amico
|
| 13 | 154th |
OF
Bob Higginson
|
| 14 | 159th |
SP
Brad Radke
|
| 15 | 178th |
SP
Shawn Estes
|
| 16 | 183rd | SP Andy Ashby |
| 17 | 202nd |
OF
Ellis Burks
|
| 18 | 207th |
2B
Quilvio Veras
|
| 19 | 226th |
RP
Jose Jimenez
|
| 20 | 231st | 1B Derrek Lee |
| 21 | 250th | SP Ramon Ortiz |
| 22 | 255th |
SP
Ben Sheets
|
| 23 | 274th |
2B
Fernando Vina
|
| 24 | 279th |
3B
Aramis Ramirez
|
| 25 | 298th |
C
Sandy Alomar Jr.
|
| 26 | 303rd |
RP
Jose Mesa
|
| 27 | 322nd |
SP
C.C. Sabathia
|
| 28 | 327th |
SS
Mark Loretta
|
| 29 | 346th |
SP
James Baldwin
|