| Round | Overall | Player |
|---|---|---|
| 1 | 6th | SS Derek Jeter NYA |
| 2 | 19th | SP Greg Maddux Atl |
| 3 | 30th | OF J.D. Drew StL |
| 4 | 43rd | 1B Richie Sexson Mil |
| 5 | 54th | RP Troy Percival Ana |
| 6 | 67th | OF Andruw Jones Atl |
| 7 | 78th | SP Russ Ortiz SF |
| 8 | 91st | 1B Sean Casey Cin |
| 9 | 102nd | C Mike Lieberthal Phi |
| 10 | 115th | 3B Hank Blalock Tex |
| 11 | 126th | RP Matt Anderson Det |
| 12 | 139th | OF Darin Erstad Ana |
| 13 | 150th | RP Anthony Alford ChN |
| 14 | 163rd | C Ramon Hernandez Oak |
| 15 | 174th | OF Ben Grieve TB |
| 16 | 187th | 2B Marlon Anderson Phi |
| 17 | 198th | OF Todd Hollandsworth Col |
| 18 | 211th | SP James Baldwin Sea |
| 19 | 222nd | 1B Travis Lee Phi |
| 20 | 235th | 3B Travis Fryman Cle |
| 21 | 246th | OF Vernon Wells Tor |
| 22 | 259th | SP Steve Trachsel NYN |
| 23 | 270th | 2B Ricky Gutierrez Cle |
| 24 | 283rd | SP Mark Redman Det |
| 25 | 294th | SP Jason Bere ChN |
| 26 | 307th | SP Terry Adams Phi |
| 27 | 318th | SP Paul Wilson TB |
| 28 | 331st | SP Odalis Perez LA |
| 29 | 342nd | SS Neifi Perez KC |