| Round | Overall | Player |
|---|---|---|
| 1 | 7th | OF Barry Bonds SF |
| 2 | 18th | OF Shawn Green LA |
| 3 | 31st | RP Keith Foulke ChA |
| 4 | 42nd | RP Robb Nen SF |
| 5 | 55th | RP Billy Wagner Hou |
| 6 | 66th | OF Bernie Williams NYA |
| 7 | 79th | OF Moises Alou ChN |
| 8 | 90th | 2B Craig Biggio Hou |
| 9 | 103rd | 1B Tino Martinez StL |
| 10 | 114th | 3B Sean Burroughs SD |
| 11 | 127th | SP Cory Lidle Oak |
| 12 | 138th | C Jason Varitek Bos |
| 13 | 151st | SP Robert Person Phi |
| 14 | 162nd | SP Ramon Ortiz Ana |
| 15 | 175th | SP Dustin Hermanson Bos |
| 16 | 186th | SS Alex Gonzalez ChN |
| 17 | 199th | DH Nick Johnson NYA |
| 18 | 210th | 3B Robin Ventura NYA |
| 19 | 223rd | C Ben Davis Sea |
| 20 | 234th | SS Omar Vizquel Cle |
| 21 | 247th | 2B Pokey Reese Pit |
| 22 | 258th | OF Torii Hunter Min |
| 23 | 271st | 1B J.T. Snow SF |
| 24 | 282nd | SP Kirk Rueter SF |
| 25 | 295th | SP Elmer Dessens Cin |
| 26 | 306th | RP Matt Herges Mon |
| 27 | 319th | SP Kurt Ainsworth SF |
| 28 | 330th | SP Tim Redding Hou |
| 29 | 343rd | OF Tsuyoshi Shinjo SF |