| Round | Overall | Player |
|---|---|---|
| 1 | 10th | SS Nomar Garciaparra Bos |
| 2 | 15th | OF Shawn Green LA |
| 3 | 34th | OF Juan Gonzalez Tex |
| 4 | 39th | RP Keith Foulke ChA |
| 5 | 58th | SP Barry Zito Oak |
| 6 | 63rd | RP John Smoltz Atl |
| 7 | 82nd | SP Russ Ortiz SF |
| 8 | 87th | 1B Paul Konerko ChA |
| 9 | 106th | OF Carlos Beltran KC |
| 10 | 111th | RP Matt Anderson Det |
| 11 | 130th | OF Jeromy Burnitz NYN |
| 12 | 135th | SP Cory Lidle Oak |
| 13 | 154th | C Ben Petrick Col |
| 14 | 159th | 2B Pokey Reese Pit |
| 15 | 178th | SP Dustin Hermanson Bos |
| 16 | 183rd | 3B Morgan Ensberg Hou |
| 17 | 202nd | C Jason Varitek Bos |
| 18 | 207th | 3B Robin Ventura NYA |
| 19 | 226th | 1B Travis Lee Phi |
| 20 | 231st | OF Matt Lawton Cle |
| 21 | 250th | SS Omar Vizquel Cle |
| 22 | 255th | OF Terrence Long Oak |
| 23 | 274th | SP Elmer Dessens Cin |
| 24 | 279th | RP Chad Fox Mil |
| 25 | 298th | SP Tim Redding Hou |
| 26 | 303rd | SP Miguel Batista Ari |
| 27 | 322nd | 2B Jerry Hairston Jr. Bal |
| 28 | 327th | SP Kurt Ainsworth SF |
| 29 | 346th | OF Chuck Knoblauch KC |