| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | OF Sammy Sosa ChN |
| 2 | 22nd | OF Lance Berkman Hou |
| 3 | 27th | 3B Eric Chavez Oak |
| 4 | 46th | 1B Mike Sweeney KC |
| 5 | 51st | OF Andruw Jones Atl |
| 6 | 70th | 2B Alfonso Soriano NYA |
| 7 | 75th | OF J.D. Drew StL |
| 8 | 94th | SP Bartolo Colon Cle |
| 9 | 99th | SP Josh Beckett Fla |
| 10 | 118th | SP Brad Penny Fla |
| 11 | 123rd | OF Jermaine Dye Oak |
| 12 | 142nd | RP Danny Graves Cin |
| 13 | 147th | SS Juan Uribe Col |
| 14 | 166th | SP Tony Armas Jr. Mon |
| 15 | 171st | OF Todd Hollandsworth Col |
| 16 | 190th | C Ramon Hernandez Oak |
| 17 | 195th | SS Barry Larkin Cin |
| 18 | 214th | SP Kevin Appier Ana |
| 19 | 219th | 3B Dean Palmer Det |
| 20 | 238th | OF Ben Grieve TB |
| 21 | 243rd | SP Andy Ashby LA |
| 22 | 262nd | SP Ismael Valdez Tex |
| 23 | 267th | 2B Marlon Anderson Phi |
| 24 | 286th | 1B David Segui Bal |
| 25 | 291st | SP Albie Lopez Atl |
| 26 | 310th | RP Braden Looper Fla |
| 27 | 315th | 3B Fernando Tatis Mon |
| 28 | 334th | SP Odalis Perez LA |
| 29 | 339th | SP Sidney Ponson Bal |