| Round | Overall | Player |
|---|---|---|
| 1 | 5th | 3B Albert Pujols StL |
| 2 | 20th | SS Derek Jeter NYA |
| 3 | 29th | C Paul Lo Duca LA |
| 4 | 44th | OF Cliff Floyd Fla |
| 5 | 53rd | 2B Jeff Kent SF |
| 6 | 68th | OF Bernie Williams NYA |
| 7 | 77th | 1B Frank Thomas ChA |
| 8 | 92nd | SP Chan Ho Park Tex |
| 9 | 101st | SP Jamie Moyer Sea |
| 10 | 116th | RP Jose Mesa Phi |
| 11 | 125th | RP Anthony Alford ChN |
| 12 | 140th | OF Juan Pierre Col |
| 13 | 149th | OF Johnny Damon Bos |
| 14 | 164th | RP Roberto Hernandez KC |
| 15 | 173rd | SP Woody Williams StL |
| 16 | 188th | C Ramon Hernandez Oak |
| 17 | 197th | SP John Burkett Bos |
| 18 | 212th | 3B Mike Lowell Fla |
| 19 | 221st | SP Todd Ritchie ChA |
| 20 | 236th | 1B Lee Stevens Mon |
| 21 | 245th | OF Matt Lawton Cle |
| 22 | 260th | SS Omar Vizquel Cle |
| 23 | 269th | SP Kirk Rueter SF |
| 24 | 284th | 2B Jose Offerman Bos |
| 25 | 293rd | SP Sterling Hitchcock NYA |
| 26 | 308th | SP Kip Wells Pit |
| 27 | 317th | SP Kenny Rogers Tex |
| 28 | 332nd | 1B Erubiel Durazo Ari |
| 29 | 341st | RP LaTroy Hawkins Min |