| Round | Overall | Player |
|---|---|---|
| 1 | 10th | OF Vladimir Guerrero Mon |
| 2 | 15th | SP Pedro Martinez Bos |
| 3 | 34th | 1B Jim Thome Cle |
| 4 | 39th | SS Rich Aurilia SF |
| 5 | 58th | 3B Aramis Ramirez Pit |
| 6 | 63rd | RP Kazuhiro Sasaki Sea |
| 7 | 82nd | SP Andy Pettitte NYA |
| 8 | 87th | 2B Jose Vidro Mon |
| 9 | 106th | C Mike Lieberthal Phi |
| 10 | 111th | OF Moises Alou ChN |
| 11 | 130th | SP Kelvim Escobar Tor |
| 12 | 135th | SP Aaron Sele Ana |
| 13 | 154th | OF Carlos Lee ChA |
| 14 | 159th | SP Cory Lidle Oak |
| 15 | 178th | SP John Burkett Bos |
| 16 | 183rd | SP David Wells NYA |
| 17 | 202nd | 1B John Olerud Sea |
| 18 | 207th | OF Greg Vaughn TB |
| 19 | 226th | 1B Doug Mientkiewicz Min |
| 20 | 231st | C Damian Miller Ari |
| 21 | 250th | SP Brian Moehler Det |
| 22 | 255th | RP John Rocker Tex |
| 23 | 274th | DH Brad Fullmer Ana |
| 24 | 279th | 2B Carlos Febles KC |
| 25 | 298th | SP Denny Neagle Col |
| 26 | 303rd | OF Gabe Kapler Tex |
| 27 | 322nd | SP James Baldwin Sea |
| 28 | 327th | SS Julio Lugo Hou |
| 29 | 346th | RP Bret Prinz Ari |