| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | 1B Jason Giambi NYA |
| 2 | 23rd | SP Matt Morris StL |
| 3 | 26th | SP Roger Clemens NYA |
| 4 | 47th | OF Larry Walker Col |
| 5 | 50th | 3B Corey Koskie Min |
| 6 | 71st | 2B Bret Boone Sea |
| 7 | 74th | SS Orlando Cabrera Mon |
| 8 | 95th | C Charles Johnson Fla |
| 9 | 98th | RP Jose Mesa Phi |
| 10 | 119th | OF Mike Cameron Sea |
| 11 | 122nd | SP Jamie Moyer Sea |
| 12 | 143rd | 1B Tino Martinez StL |
| 13 | 146th | SP Todd Ritchie ChA |
| 14 | 167th | OF Todd Hollandsworth Col |
| 15 | 170th | DH Nick Johnson NYA |
| 16 | 191st | SS David Eckstein Ana |
| 17 | 194th | 2B Marlon Anderson Phi |
| 18 | 215th | C Ben Davis Sea |
| 19 | 218th | 3B Vinny Castilla Atl |
| 20 | 239th | OF Terrence Long Oak |
| 21 | 242nd | RP Eddie Guardado Min |
| 22 | 263rd | SP Jeff Suppan KC |
| 23 | 266th | OF Marlon Byrd Phi |
| 24 | 287th | OF Milton Bradley Cle |
| 25 | 290th | OF Shane Spencer NYA |
| 26 | 311th | SP Jamey Wright Mil |
| 27 | 314th | SP Albie Lopez Atl |
| 28 | 335th | SP Tanyon Sturtze TB |
| 29 | 338th | 1B Lee Stevens Mon |