| Round | Overall | Player |
|---|---|---|
| 1 | 8th | SP Tim Hudson Oak |
| 2 | 17th | SP Mark Mulder Oak |
| 3 | 32nd | OF Shawn Green LA |
| 4 | 41st | 1B Phil Nevin SD |
| 5 | 56th | C Paul Lo Duca LA |
| 6 | 65th | RP Jason Isringhausen StL |
| 7 | 80th | 2B Ray Durham ChA |
| 8 | 89th | SP Al Leiter NYN |
| 9 | 104th | SP Mark Buehrle ChA |
| 10 | 113th | SS Juan Uribe Col |
| 11 | 128th | OF Raul Mondesi Tor |
| 12 | 137th | 3B Sean Burroughs SD |
| 13 | 152nd | OF Jose Cruz Jr Tor |
| 14 | 161st | SP Bud Smith StL |
| 15 | 176th | 1B Carlos Pena Oak |
| 16 | 185th | OF Carl Everett Tex |
| 17 | 200th | SP Kris Benson Pit |
| 18 | 209th | RP Mike Williams Pit |
| 19 | 224th | 3B Robin Ventura NYA |
| 20 | 233rd | SS Jose Hernandez Mil |
| 21 | 248th | SP Adam Eaton SD |
| 22 | 257th | C Raul Casanova Mil |
| 23 | 272nd | OF Jeremy Giambi Oak |
| 24 | 281st | 2B Frank Menechino Oak |
| 25 | 296th | SP Glendon Rusch Mil |
| 26 | 305th | OF Danny Bautista Ari |
| 27 | 320th | RP Mike DeJean Mil |
| 28 | 329th | 3B Drew Henson NYA |
| 29 | 344th | SP Nick Neugebauer Mil |