| Round | Overall | Player |
|---|---|---|
| 1 | 4th | C Mike Piazza NYN |
| 2 | 21st | SS Derek Jeter NYA |
| 3 | 28th | OF Brian S. Giles Pit |
| 4 | 45th | SP Javier Vazquez Mon |
| 5 | 52nd | 1B Rafael Palmeiro Tex |
| 6 | 69th | OF Adam Dunn Cin |
| 7 | 76th | RP Billy Wagner Hou |
| 8 | 93rd | SP Al Leiter NYN |
| 9 | 100th | 3B Edgardo Alfonzo NYN |
| 10 | 117th | SP Brad Radke Min |
| 11 | 124th | RP Ugueth Urbina Bos |
| 12 | 141st | OF Darin Erstad Ana |
| 13 | 148th | SP Jamie Moyer Sea |
| 14 | 165th | 2B Marcus Giles Atl |
| 15 | 172nd | OF Trot Nixon Bos |
| 16 | 189th | SP Pedro Astacio NYN |
| 17 | 196th | 1B Carlos Pena Oak |
| 18 | 213th | OF Tim Salmon Ana |
| 19 | 220th | C Ben Petrick Col |
| 20 | 237th | SS Felipe Lopez Tor |
| 21 | 244th | SP Carl Pavano Mon |
| 22 | 261st | OF David Justice Oak |
| 23 | 268th | SP Matt Clement ChN |
| 24 | 285th | 1B Steve Cox TB |
| 25 | 292nd | SP Luke Prokopec Tor |
| 26 | 309th | 3B Fernando Tatis Mon |
| 27 | 316th | SP Glendon Rusch Mil |
| 28 | 333rd | 3B Mark Teixeira Tex |
| 29 | 340th | 3B Michael Cuddyer Min |