| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | 1B Todd Helton Col |
| 2 | 23rd | SS Miguel Tejada Oak |
| 3 | 26th | OF Magglio Ordonez ChA |
| 4 | 47th | 3B Aramis Ramirez Pit |
| 5 | 50th | SP Kerry Wood ChN |
| 6 | 71st | 2B Ray Durham ChA |
| 7 | 74th | SP Wade Miller Hou |
| 8 | 95th | SP Brad Penny Fla |
| 9 | 98th | OF Richard Hidalgo Hou |
| 10 | 119th | OF Preston Wilson Fla |
| 11 | 122nd | 3B Hank Blalock Tex |
| 12 | 143rd | SP Kelvim Escobar Tor |
| 13 | 146th | OF Carl Everett Tex |
| 14 | 167th | SP Tony Armas Jr. Mon |
| 15 | 170th | RP Scott Strickland Mon |
| 16 | 191st | SP Carlos Hernandez Hou |
| 17 | 194th | C Jason Varitek Bos |
| 18 | 215th | 1B Derrek Lee Fla |
| 19 | 218th | RP Mike Williams Pit |
| 20 | 239th | RP Jeff Zimmerman Tex |
| 21 | 242nd | OF Gabe Kapler Tex |
| 22 | 263rd | OF Kevin Millar Fla |
| 23 | 266th | C Damian Miller Ari |
| 24 | 287th | SP Nick Neugebauer Mil |
| 25 | 290th | 2B D'Angelo Jimenez SD |
| 26 | 311th | OF Mark Quinn KC |
| 27 | 314th | SP Odalis Perez LA |
| 28 | 335th | SS Ramon Vazquez SD |
| 29 | 338th | 1B Jay Gibbons Bal |