| Round | Overall | Player |
|---|---|---|
| 1 | 8th | 1B Jason Giambi NYA |
| 2 | 17th | 3B Albert Pujols StL |
| 3 | 32nd | OF Larry Walker Col |
| 4 | 41st | OF Andruw Jones Atl |
| 5 | 56th | SP Greg Maddux Atl |
| 6 | 65th | 2B Jeff Kent SF |
| 7 | 80th | SS Juan Uribe Col |
| 8 | 89th | C Toby Hall TB |
| 9 | 104th | RP Jose Mesa Phi |
| 10 | 113th | OF Jim Edmonds StL |
| 11 | 128th | SP Cory Lidle Oak |
| 12 | 137th | SP Kazuhisa Ishii LA |
| 13 | 152nd | OF Todd Hollandsworth Col |
| 14 | 161st | 3B Jose Valentin ChA |
| 15 | 176th | SS Edgar Renteria StL |
| 16 | 185th | C Mike Lieberthal Phi |
| 17 | 200th | SP Shawn Estes NYN |
| 18 | 209th | 2B Todd Walker Cin |
| 19 | 224th | RP Eddie Guardado Min |
| 20 | 233rd | 1B Doug Mientkiewicz Min |
| 21 | 248th | RP Jose Jimenez Col |
| 22 | 257th | 1B David Segui Bal |
| 23 | 272nd | SP James Baldwin Sea |
| 24 | 281st | SP Jake Peavy SD |
| 25 | 296th | RP Vicente Padilla Phi |
| 26 | 305th | OF Ruben Sierra Sea |
| 27 | 320th | OF Austin Kearns Cin |
| 28 | 329th | OF Shane Spencer NYA |
| 29 | 344th | SP Julian Tavarez Fla |