| Round | Overall | Player |
|---|---|---|
| 1 | 6th | SP Pedro Martinez Bos |
| 2 | 19th | 1B Carlos Delgado Tor |
| 3 | 30th | SP Mike Mussina NYA |
| 4 | 43rd | SP Freddy Garcia Sea |
| 5 | 54th | 3B Adrian Beltre LA |
| 6 | 67th | RP Billy Koch Oak |
| 7 | 78th | OF Bernie Williams NYA |
| 8 | 91st | 1B Frank Thomas ChA |
| 9 | 102nd | OF Jose Cruz Jr Tor |
| 10 | 115th | RP Bob Wickman Cle |
| 11 | 126th | 2B Craig Biggio Hou |
| 12 | 139th | OF Jeromy Burnitz NYN |
| 13 | 150th | C Ramon Hernandez Oak |
| 14 | 163rd | RP John Rocker Tex |
| 15 | 174th | SP Chris Carpenter Tor |
| 16 | 187th | SP Eric Gagne LA |
| 17 | 198th | 1B Dmitri Young Det |
| 18 | 211th | SS Alex Gonzalez ChN |
| 19 | 222nd | SP Danys Baez Cle |
| 20 | 235th | OF Mark Kotsay SD |
| 21 | 246th | RP Esteban Yan TB |
| 22 | 259th | OF Jeremy Giambi Oak |
| 23 | 270th | 3B Travis Fryman Cle |
| 24 | 283rd | 2B Jerry Hairston Jr. Bal |
| 25 | 294th | OF Jeff Conine Bal |
| 26 | 307th | C Michael Barrett Mon |
| 27 | 318th | SP Kenny Rogers Tex |
| 28 | 331st | SP Rick Helling Ari |
| 29 | 342nd | SS Mike Bordick Bal |