| Round | Overall | Player |
|---|---|---|
| 1 | 9th | 1B Jeff Bagwell Hou |
| 2 | 16th | SP Curt Schilling Ari |
| 3 | 33rd | OF Juan Gonzalez Tex |
| 4 | 40th | SP Roy Oswalt Hou |
| 5 | 57th | SP Kevin Brown LA |
| 6 | 64th | OF J.D. Drew StL |
| 7 | 81st | RP John Smoltz Atl |
| 8 | 88th | RP Jason Isringhausen StL |
| 9 | 105th | SP Tom Glavine Atl |
| 10 | 112th | OF Geoff Jenkins Mil |
| 11 | 129th | OF Raul Mondesi Tor |
| 12 | 136th | 1B Mo Vaughn NYN |
| 13 | 153rd | 3B Mike Lowell Fla |
| 14 | 160th | SP Woody Williams StL |
| 15 | 177th | SP Robert Person Phi |
| 16 | 184th | 2B Eric Young Mil |
| 17 | 201st | DH Ellis Burks Cle |
| 18 | 208th | SS Tony Womack Ari |
| 19 | 225th | 3B Aaron Boone Cin |
| 20 | 232nd | SS David Eckstein Ana |
| 21 | 249th | SP Andy Ashby LA |
| 22 | 256th | C Raul Casanova Mil |
| 23 | 273rd | 3B Dean Palmer Det |
| 24 | 280th | 2B Damion Easley Det |
| 25 | 297th | OF Kenny Lofton ChA |
| 26 | 304th | C A.J. Pierzynski Min |
| 27 | 321st | SP Brian Tollberg SD |
| 28 | 328th | 3B Shane Halter Det |
| 29 | 345th | 1B Eric Karros LA |