| Round | Overall | Player |
|---|---|---|
| 1 | 5th | OF Vladimir Guerrero Mon |
| 2 | 20th | OF Albert Pujols StL |
| 3 | 29th | 3B Troy Glaus Ana |
| 4 | 44th | OF Luis Gonzalez Ari |
| 5 | 53rd | SP Derek Lowe Bos |
| 6 | 68th | RP Billy Wagner Hou |
| 7 | 77th | RP Kelvim Escobar Tor |
| 8 | 92nd | SP Randy Wolf Phi |
| 9 | 101st | SP Andy Pettitte NYA |
| 10 | 116th | 1B Mo Vaughn NYN |
| 11 | 125th | SP Russ Ortiz Atl |
| 12 | 140th | DH Erubiel Durazo Oak |
| 13 | 149th | SS David Eckstein Ana |
| 14 | 164th | SP Brian Lawrence SD |
| 15 | 173rd | 3B Hank Blalock Tex |
| 16 | 188th | C Mike Lieberthal Phi |
| 17 | 197th | 3B Mark Teixeira Tex |
| 18 | 212th | SP Adam Eaton SD |
| 19 | 221st | RP Matt Anderson Det |
| 20 | 236th | 2B Marcus Giles Atl |
| 21 | 245th | SP Dennis Stark Col |
| 22 | 260th | SP Kyle Lohse Min |
| 23 | 269th | C A.J. Pierzynski Min |
| 24 | 284th | 1B Doug Mientkiewicz Min |
| 25 | 293rd | 2B D'Angelo Jimenez Cin |
| 26 | 308th | SS Julio Lugo TB |
| 27 | 317th | OF Matt Lawton Cle |
| 28 | 332nd | OF Michael Cuddyer Min |
| 29 | 341st | DH Nick Johnson NYA |