| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Tex |
| 2 | 24th | OF Magglio Ordonez ChA |
| 3 | 25th | SP Tim Hudson Oak |
| 4 | 48th | OF Larry Walker Col |
| 5 | 49th | RP Armando Benitez Sea |
| 6 | 72nd | OF Garret Anderson Ana |
| 7 | 73rd | SP Mark Prior ChN |
| 8 | 96th | 3B Edgardo Alfonzo SF |
| 9 | 97th | SP Javier Vazquez Mon |
| 10 | 120th | DH Frank Thomas ChA |
| 11 | 121st | SP Roger Clemens NYA |
| 12 | 144th | C Benito Santiago SF |
| 13 | 145th | RP Matt Mantei Ari |
| 14 | 168th | OF Jay Payton Col |
| 15 | 169th | 1B Derrek Lee Fla |
| 16 | 192nd | SP Brett Myers Phi |
| 17 | 193rd | SP Tony Armas Jr. Mon |
| 18 | 216th | 3B Hank Blalock Tex |
| 19 | 217th | SP Jose Contreras NYA |
| 20 | 240th | 3B Ty Wigginton NYN |
| 21 | 241st | 2B Brandon Phillips Cle |
| 22 | 264th | 2B Bobby Hill Pit |
| 23 | 265th | SS Barry Larkin Cin |
| 24 | 288th | SP Danny Graves Cin |
| 25 | 289th | C Ramon Hernandez Oak |
| 26 | 312th | OF Corey Patterson ChN |
| 27 | 313th | SP Darren Dreifort LA |
| 28 | 336th | 1B Travis Hafner Cle |
| 29 | 337th | OF Jack Cust Bal |