| Round | Overall | Player |
|---|---|---|
| 1 | 5th | OF Vladimir Guerrero Mon |
| 2 | 20th | 1B Todd Helton Col |
| 3 | 29th | OF Brian S. Giles Pit |
| 4 | 44th | SP Greg Maddux Atl |
| 5 | 53rd | SP Kerry Wood ChN |
| 6 | 68th | OF Luis Gonzalez Ari |
| 7 | 77th | OF Gary Sheffield Atl |
| 8 | 92nd | RP Jose Mesa Phi |
| 9 | 101st | SP Kevin Brown LA |
| 10 | 116th | SS Orlando Cabrera Mon |
| 11 | 125th | SP Ramon Ortiz Ana |
| 12 | 140th | C Charles Johnson Col |
| 13 | 149th | 3B Shea Hillenbrand Ari |
| 14 | 164th | SP Kris Benson Pit |
| 15 | 173rd | 2B Adam Kennedy Ana |
| 16 | 188th | SP Damian Moss Bal |
| 17 | 197th | RP Scott Williamson Bos |
| 18 | 212th | 3B Mark Teixeira Tex |
| 19 | 221st | 1B Carlos Pena Det |
| 20 | 236th | SP Johan Santana Min |
| 21 | 245th | 2B Marcus Giles Atl |
| 22 | 260th | C Ben Davis Sea |
| 23 | 269th | SS Jack Wilson Pit |
| 24 | 284th | OF Reggie Sanders Pit |
| 25 | 293rd | SP John Thomson Tex |
| 26 | 308th | SP Jeremy Affeldt KC |
| 27 | 317th | OF Joe Borchard ChA |
| 28 | 332nd | SP Juan Cruz ChN |
| 29 | 341st | 1B Lyle Overbay Ari |