| Round | Overall | Player |
|---|---|---|
| 1 | 11th | 1B Jason Giambi NYA |
| 2 | 14th | OF Bobby Abreu Phi |
| 3 | 35th | 3B Eric Chavez Oak |
| 4 | 38th | SS Jimmy Rollins Phi |
| 5 | 59th | RP Keith Foulke Oak |
| 6 | 62nd | RP Billy Koch ChA |
| 7 | 83rd | 2B Todd Walker Bos |
| 8 | 86th | SP Randy Wolf Phi |
| 9 | 107th | C Jason Kendall Pit |
| 10 | 110th | SP Matt Clement ChN |
| 11 | 131st | RP Danys Baez Cle |
| 12 | 134th | SP Brad Radke Min |
| 13 | 155th | OF Raul Mondesi Ari |
| 14 | 158th | SP Brad Penny Fla |
| 15 | 179th | DH Josh Phelps Tor |
| 16 | 182nd | SS Cristian Guzman Min |
| 17 | 203rd | OF Mark Kotsay SD |
| 18 | 206th | SP Brian Lawrence SD |
| 19 | 227th | C Einar Diaz Tex |
| 20 | 230th | OF Juan Pierre Fla |
| 21 | 251st | 2B Luis Rivas Min |
| 22 | 254th | 3B Sean Burroughs SD |
| 23 | 275th | RP Byung-Hyun Kim Bos |
| 24 | 278th | 2B Ron Belliard Col |
| 25 | 299th | SP Ted Lilly Oak |
| 26 | 302nd | OF Dmitri Young Det |
| 27 | 323rd | 1B Hee Seop Choi ChN |
| 28 | 326th | OF Frank Catalanotto Tor |
| 29 | 347th | 3B Bill Mueller Bos |