| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | SP Randy Johnson Ari |
| 2 | 22nd | SP Mark Mulder Oak |
| 3 | 27th | SP Derek Lowe Bos |
| 4 | 46th | RP Robb Nen SF |
| 5 | 51st | OF Adam Dunn Cin |
| 6 | 70th | 2B Bret Boone Sea |
| 7 | 75th | 1B Richie Sexson Mil |
| 8 | 94th | OF Preston Wilson Col |
| 9 | 99th | 1B Ryan Klesko SD |
| 10 | 118th | SS Edgar Renteria StL |
| 11 | 123rd | SP Al Leiter NYN |
| 12 | 142nd | 3B Aramis Ramirez ChN |
| 13 | 147th | OF Jermaine Dye Oak |
| 14 | 166th | OF Eli Marrero StL |
| 15 | 171st | OF Trot Nixon Bos |
| 16 | 190th | C A.J. Pierzynski Min |
| 17 | 195th | SP Casey Fossum Bos |
| 18 | 214th | SP Oliver Perez SD |
| 19 | 219th | SP Carlos Zambrano ChN |
| 20 | 238th | OF Karim Garcia NYA |
| 21 | 243rd | SP Pedro Astacio NYN |
| 22 | 262nd | 3B Jared Sandberg TB |
| 23 | 267th | SS Jose Reyes NYN |
| 24 | 286th | SP Jon Garland ChA |
| 25 | 291st | RP Anthony Alford ChN |
| 26 | 310th | SS Ramon Vazquez SD |
| 27 | 315th | OF Carl Everett ChA |
| 28 | 334th | 2B Pokey Reese Pit |
| 29 | 339th | C Geronimo Gil Bal |