| Round | Overall | Player |
|---|---|---|
| 1 | 6th | OF Sammy Sosa ChN |
| 2 | 19th | OF Manny Ramirez Bos |
| 3 | 30th | 1B Jeff Bagwell Hou |
| 4 | 43rd | RP Eric Gagne LA |
| 5 | 54th | SP Mike Mussina NYA |
| 6 | 67th | 2B Roberto Alomar ChA |
| 7 | 78th | RP Kazuhiro Sasaki Sea |
| 8 | 91st | C Paul Lo Duca LA |
| 9 | 102nd | OF Hideki Matsui NYA |
| 10 | 115th | OF Juan Gonzalez Tex |
| 11 | 126th | SP Chan Ho Park Tex |
| 12 | 139th | 3B Adrian Beltre LA |
| 13 | 150th | 3B Jose Hernandez Pit |
| 14 | 163rd | SP Orlando Hernandez Mon |
| 15 | 174th | SP C.C. Sabathia Cle |
| 16 | 187th | SP Kazuhisa Ishii LA |
| 17 | 198th | OF Jose Cruz Jr SF |
| 18 | 211th | SP Kevin Appier KC |
| 19 | 222nd | SP Cory Lidle Tor |
| 20 | 235th | 1B Fred McGriff LA |
| 21 | 246th | SP Livan Hernandez Mon |
| 22 | 259th | 2B Joe Thurston LA |
| 23 | 270th | SS Angel Berroa KC |
| 24 | 283rd | C Victor Martinez Cle |
| 25 | 294th | RP Braden Looper Fla |
| 26 | 307th | SP Shane Reynolds Atl |
| 27 | 318th | SP Paul Wilson Cin |
| 28 | 331st | 3B Vinny Castilla Atl |
| 29 | 342nd | RP Bob Howry Bos |