| Round | Overall | Player |
|---|---|---|
| 1 | 9th | SP Pedro Martinez Bos |
| 2 | 16th | SS Nomar Garciaparra Bos |
| 3 | 33rd | 3B Scott Rolen StL |
| 4 | 40th | OF Ken Griffey Jr Cin |
| 5 | 57th | RP Troy Percival Ana |
| 6 | 64th | 2B Ray Durham SF |
| 7 | 81st | 1B Paul Konerko ChA |
| 8 | 88th | SP Freddy Garcia Sea |
| 9 | 105th | OF Jim Edmonds StL |
| 10 | 112th | SP Russ Ortiz Atl |
| 11 | 129th | OF Shannon Stewart Min |
| 12 | 136th | SP Vicente Padilla Phi |
| 13 | 153rd | OF Austin Kearns Cin |
| 14 | 160th | SP John Lackey Ana |
| 15 | 177th | 1B Sean Casey Cin |
| 16 | 184th | 2B Luis Castillo Fla |
| 17 | 201st | SP Elmer Dessens Ari |
| 18 | 208th | SS Omar Vizquel Cle |
| 19 | 225th | RP Scott Stewart Mon |
| 20 | 232nd | 3B Fernando Tatis Mon |
| 21 | 249th | OF Darin Erstad Ana |
| 22 | 256th | SP Sidney Ponson SF |
| 23 | 273rd | C Miguel Olivo ChA |
| 24 | 280th | OF Geoff Jenkins Mil |
| 25 | 297th | SP Jason Simontacchi StL |
| 26 | 304th | 2B D'Angelo Jimenez Cin |
| 27 | 321st | SP Adam Eaton SD |
| 28 | 328th | OF Jeromy Burnitz LA |
| 29 | 345th | RP Franklyn German Det |