| Round | Overall | Player |
|---|---|---|
| 1 | 7th | SP Pedro Martinez Bos |
| 2 | 18th | SP Barry Zito Oak |
| 3 | 31st | SP Roy Halladay Tor |
| 4 | 42nd | SP Wade Miller Hou |
| 5 | 55th | RP Keith Foulke Oak |
| 6 | 66th | 2B Ray Durham SF |
| 7 | 79th | 3B Aramis Ramirez ChN |
| 8 | 90th | OF Vernon Wells Tor |
| 9 | 103rd | 1B Mo Vaughn NYN |
| 10 | 114th | SP Russ Ortiz Atl |
| 11 | 127th | OF Mike Cameron Sea |
| 12 | 138th | SP Roger Clemens NYA |
| 13 | 151st | DH Josh Phelps Tor |
| 14 | 162nd | RP Scott Williamson Bos |
| 15 | 175th | OF Darin Erstad Ana |
| 16 | 186th | OF Jay Gibbons Bal |
| 17 | 199th | SP Tim Wakefield Bos |
| 18 | 210th | SS Omar Vizquel Cle |
| 19 | 223rd | SP Jimmy Haynes Cin |
| 20 | 234th | 3B Joe Randa KC |
| 21 | 247th | 1B Robert Fick Atl |
| 22 | 258th | OF Eli Marrero StL |
| 23 | 271st | 2B Adam Kennedy Ana |
| 24 | 282nd | SP John Patterson Ari |
| 25 | 295th | C Geronimo Gil Bal |
| 26 | 306th | OF Danny Bautista Ari |
| 27 | 319th | SP Gil Meche Sea |
| 28 | 330th | OF Rocco Baldelli TB |
| 29 | 343rd | SS Royce Clayton Mil |