| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | SP Randy Johnson Ari |
| 2 | 23rd | OF Shawn Green LA |
| 3 | 26th | RP John Smoltz Atl |
| 4 | 47th | 1B Richie Sexson Mil |
| 5 | 50th | 2B Bret Boone Sea |
| 6 | 71st | OF Luis Gonzalez Ari |
| 7 | 74th | 3B Eric Hinske Tor |
| 8 | 95th | SS Jose Valentin ChA |
| 9 | 98th | OF Jermaine Dye Oak |
| 10 | 119th | SP Woody Williams StL |
| 11 | 122nd | OF Moises Alou ChN |
| 12 | 143rd | C Benito Santiago SF |
| 13 | 146th | SP Paul Byrd Atl |
| 14 | 167th | RP Jorge Julio Bal |
| 15 | 170th | SP Kip Wells Pit |
| 16 | 191st | OF Tim Salmon Ana |
| 17 | 194th | SS Chris Woodward Tor |
| 18 | 215th | SP Livan Hernandez Mon |
| 19 | 218th | 2B Fernando Vina StL |
| 20 | 239th | SP Jason Jennings Col |
| 21 | 242nd | C Brad Ausmus Hou |
| 22 | 263rd | OF Richard Hidalgo Hou |
| 23 | 266th | 3B Fernando Tatis Mon |
| 24 | 287th | 1B Jeff Conine Bal |
| 25 | 290th | RP Matt Anderson Det |
| 26 | 311th | SP Sidney Ponson SF |
| 27 | 314th | DH Jeremy Giambi Bos |
| 28 | 335th | SP Shawn Estes ChN |
| 29 | 338th | SP Jimmy Anderson SF |