| Round | Overall | Player |
|---|---|---|
| 1 | 10th | OF Sammy Sosa ChN |
| 2 | 15th | SP Barry Zito Oak |
| 3 | 34th | SP Mark Mulder Oak |
| 4 | 39th | OF Ken Griffey Jr Cin |
| 5 | 58th | SP Mark Buehrle ChA |
| 6 | 63rd | RP Troy Percival Ana |
| 7 | 82nd | 1B Richie Sexson Mil |
| 8 | 87th | OF Austin Kearns Cin |
| 9 | 106th | SP Roger Clemens NYA |
| 10 | 111th | 3B Joe Crede ChA |
| 11 | 130th | RP Matt Mantei Ari |
| 12 | 135th | SS Orlando Cabrera Mon |
| 13 | 154th | 1B Sean Casey Cin |
| 14 | 159th | SP John Lackey Ana |
| 15 | 178th | SP Ryan Dempster Cin |
| 16 | 183rd | C A.J. Pierzynski Min |
| 17 | 202nd | OF Steve Finley Ari |
| 18 | 207th | SP Brad Penny Fla |
| 19 | 226th | 3B Brandon Larson Cin |
| 20 | 231st | 2B Placido Polanco Phi |
| 21 | 250th | OF Mark Kotsay SD |
| 22 | 255th | SP Oliver Perez SD |
| 23 | 274th | 2B Adam Kennedy Ana |
| 24 | 279th | C Josh Bard Cle |
| 25 | 298th | SS Ramon Vazquez SD |
| 26 | 303rd | DH Brad Fullmer Ana |
| 27 | 322nd | RP Anthony Alford ChN |
| 28 | 327th | RP Mike MacDougal KC |
| 29 | 346th | SP Jeremy Bonderman Det |