| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | OF Barry Bonds SF |
| 2 | 23rd | 3B Eric Chavez Oak |
| 3 | 26th | OF Pat Burrell Phi |
| 4 | 47th | SP Derek Lowe Bos |
| 5 | 50th | 2B Jose Vidro Mon |
| 6 | 71st | RP Mariano Rivera NYA |
| 7 | 74th | 1B Ryan Klesko SD |
| 8 | 95th | C Jason Kendall Pit |
| 9 | 98th | SP Jason Schmidt SF |
| 10 | 119th | RP Jose Mesa Phi |
| 11 | 122nd | OF Jim Edmonds StL |
| 12 | 143rd | SP Hideo Nomo LA |
| 13 | 146th | SS Jose Valentin ChA |
| 14 | 167th | SP Kirk Rueter SF |
| 15 | 170th | SP Brian Lawrence SD |
| 16 | 191st | SP Elmer Dessens Ari |
| 17 | 194th | OF Richard Hidalgo Hou |
| 18 | 215th | DH Nick Johnson NYA |
| 19 | 218th | DH Ellis Burks Cle |
| 20 | 239th | 1B Hee Seop Choi ChN |
| 21 | 242nd | SP Brett Myers Phi |
| 22 | 263rd | SP Kurt Ainsworth Bal |
| 23 | 266th | 3B Jeff Cirillo Sea |
| 24 | 287th | OF Carl Everett ChA |
| 25 | 290th | SP Darren Dreifort LA |
| 26 | 311th | C Mike Matheny StL |
| 27 | 314th | 2B Ron Belliard Col |
| 28 | 335th | SS Angel Berroa KC |
| 29 | 338th | OF Carl Crawford TB |