| Round | Overall | Player |
|---|---|---|
| 1 | 4th | SP Randy Johnson Ari |
| 2 | 21st | OF Albert Pujols StL |
| 3 | 28th | SP Roy Oswalt Hou |
| 4 | 45th | 1B Ryan Klesko SD |
| 5 | 52nd | OF Adam Dunn Cin |
| 6 | 69th | RP Robb Nen SF |
| 7 | 76th | RP Armando Benitez Sea |
| 8 | 93rd | OF Johnny Damon Bos |
| 9 | 100th | SS Rich Aurilia SF |
| 10 | 117th | C Jason Kendall Pit |
| 11 | 124th | 2B Luis Castillo Fla |
| 12 | 141st | OF Vernon Wells Tor |
| 13 | 148th | 3B Adrian Beltre LA |
| 14 | 165th | SP Brian Lawrence SD |
| 15 | 172nd | RP Jorge Julio Bal |
| 16 | 189th | 3B Mark Bellhorn Col |
| 17 | 196th | SP Brett Myers Phi |
| 18 | 213th | OF Jay Payton Col |
| 19 | 220th | SP Brett Tomko StL |
| 20 | 237th | 1B Carlos Pena Det |
| 21 | 244th | 2B Marcus Giles Atl |
| 22 | 261st | OF Richard Hidalgo Hou |
| 23 | 268th | C Victor Martinez Cle |
| 24 | 285th | SP Jon Garland ChA |
| 25 | 292nd | SP Tim Redding Hou |
| 26 | 309th | SP Juan Acevedo Tor |
| 27 | 316th | SS Jack Wilson Pit |
| 28 | 333rd | SP Joe Kennedy TB |
| 29 | 340th | C Josh Bard Cle |