| Round | Overall | Player |
|---|---|---|
| 1 | 12th | OF Manny Ramirez Bos |
| 2 | 13th | OF Lance Berkman Hou |
| 3 | 36th | 1B Jeff Bagwell Hou |
| 4 | 37th | 3B Troy Glaus Ana |
| 5 | 60th | RP Eric Gagne LA |
| 6 | 61st | 2B Bret Boone Sea |
| 7 | 84th | SP Odalis Perez LA |
| 8 | 85th | SP Kevin Brown LA |
| 9 | 108th | SS Jimmy Rollins Phi |
| 10 | 109th | SP Jamie Moyer Sea |
| 11 | 132nd | SP Jeff Weaver NYA |
| 12 | 133rd | C Charles Johnson Col |
| 13 | 156th | RP Scott Williamson Bos |
| 14 | 157th | RP Matt Mantei Ari |
| 15 | 180th | OF Randy Winn Sea |
| 16 | 181st | OF Raul Mondesi Ari |
| 17 | 204th | DH Josh Phelps Tor |
| 18 | 205th | OF Karim Garcia NYA |
| 19 | 228th | SP Kip Wells Pit |
| 20 | 229th | RP Mike DeJean StL |
| 21 | 252nd | 2B D'Angelo Jimenez Cin |
| 22 | 253rd | 3B Brandon Larson Cin |
| 23 | 276th | 3B Matt Williams Ari |
| 24 | 277th | SP Carlos Zambrano ChN |
| 25 | 300th | RP Trevor Hoffman SD |
| 26 | 301st | 1B Doug Mientkiewicz Min |
| 27 | 324th | C Ramon Hernandez Oak |
| 28 | 325th | SS Royce Clayton Mil |
| 29 | 348th | SP Esteban Loaiza ChA |