| Round | Overall | Player |
|---|---|---|
| 1 | 8th | OF Barry Bonds SF |
| 2 | 17th | 3B Eric Chavez Oak |
| 3 | 32nd | RP Eric Gagne LA |
| 4 | 41st | 2B Jeff Kent Hou |
| 5 | 56th | 1B Derrek Lee ChN |
| 6 | 65th | SS Rafael Furcal Atl |
| 7 | 80th | OF Luis Gonzalez Ari |
| 8 | 89th | SP Brandon Webb Ari |
| 9 | 104th | SP Vicente Padilla Phi |
| 10 | 113th | SP Wade Miller Hou |
| 11 | 128th | RP Jorge Julio Bal |
| 12 | 137th | OF Ryan Klesko SD |
| 13 | 152nd | SP Brett Myers Phi |
| 14 | 161st | OF Jeromy Burnitz Col |
| 15 | 176th | SP Jake Peavy SD |
| 16 | 185th | C Matthew LeCroy Min |
| 17 | 200th | SP Jerome Williams SF |
| 18 | 209th | C Ramon Hernandez SD |
| 19 | 224th | RP Braden Looper NYN |
| 20 | 233rd | SP Gil Meche Sea |
| 21 | 248th | 3B Vinny Castilla Col |
| 22 | 257th | SP Rocky Biddle Mon |
| 23 | 272nd | SP Jeff Suppan StL |
| 24 | 281st | 3B Joe Randa KC |
| 25 | 296th | 1B John Olerud NYA |
| 26 | 305th | SS David Eckstein Ana |
| 27 | 320th | 2B Aaron Miles Col |
| 28 | 329th | OF Bobby Kielty Oak |
| 29 | 344th | SP Jason Davis Cle |