| Round | Overall | Player |
|---|---|---|
| 1 | 11th | OF Manny Ramirez Bos |
| 2 | 14th | SP Roy Halladay Tor |
| 3 | 35th | OF Brian S. Giles SD |
| 4 | 38th | SP Javier Vazquez NYA |
| 5 | 59th | 3B Troy Glaus Ana |
| 6 | 62nd | SP Kevin Millwood Phi |
| 7 | 83rd | 2B Jose Vidro Mon |
| 8 | 86th | OF J.D. Drew Atl |
| 9 | 107th | SP Joel Pineiro Sea |
| 10 | 110th | SS Mike Young Tex |
| 11 | 131st | RP Francisco Cordero Tex |
| 12 | 134th | OF Milton Bradley LA |
| 13 | 155th | SS Jimmy Rollins Phi |
| 14 | 158th | OF Raul Ibanez Sea |
| 15 | 179th | SP Shawn Chacon Col |
| 16 | 182nd | SP Ryan Franklin Sea |
| 17 | 203rd | C Johnny Estrada Atl |
| 18 | 206th | 1B Hee Seop Choi LA |
| 19 | 227th | OF Jermaine Dye Oak |
| 20 | 230th | 1B Brad Fullmer Tex |
| 21 | 251st | C Michael Barrett ChN |
| 22 | 254th | 3B Casey Blake Cle |
| 23 | 275th | OF Jose Cruz Jr TB |
| 24 | 278th | SP Brian Anderson KC |
| 25 | 299th | SS Adam Everett Hou |
| 26 | 302nd | 1B Ben Broussard Cle |
| 27 | 323rd | SP Kurt Ainsworth Bal |
| 28 | 326th | SP Rodrigo Lopez Bal |
| 29 | 347th | OF Matt Lawton Cle |