| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 1B Jim Thome Phi |
| 2 | 13th | OF Gary Sheffield NYA |
| 3 | 36th | OF Jim Edmonds StL |
| 4 | 37th | C Ivan Rodriguez Det |
| 5 | 60th | SS Orlando Cabrera Bos |
| 6 | 61st | SP Bartolo Colon Ana |
| 7 | 84th | 3B Morgan Ensberg Hou |
| 8 | 85th | SP Andy Pettitte Hou |
| 9 | 108th | OF Richard Hidalgo NYN |
| 10 | 109th | SP Russ Ortiz Atl |
| 11 | 132nd | 1B Phil Nevin SD |
| 12 | 133rd | OF Geoff Jenkins Mil |
| 13 | 156th | OF Corey Patterson ChN |
| 14 | 157th | SP Hideo Nomo LA |
| 15 | 180th | SP Mark Redman Oak |
| 16 | 181st | SS Rich Aurilia SD |
| 17 | 204th | 2B Placido Polanco Phi |
| 18 | 205th | 3B Melvin Mora Bal |
| 19 | 228th | C A.J. Pierzynski SF |
| 20 | 229th | SP Zach Day Mon |
| 21 | 252nd | SP Kyle Lohse Min |
| 22 | 253rd | SP Chris Carpenter StL |
| 23 | 276th | 2B Mark Loretta SD |
| 24 | 277th | SP Tomo Ohka Mon |
| 25 | 300th | 1B Doug Mientkiewicz Bos |
| 26 | 301st | SP Jason Marquis StL |
| 27 | 324th | SP Kirk Rueter SF |
| 28 | 325th | SP Oliver Perez Pit |
| 29 | 348th | 2B Aaron Boone Cle |