| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | 1B Albert Pujols StL |
| 2 | 23rd | OF Bobby Abreu Phi |
| 3 | 26th | SS Edgar Renteria StL |
| 4 | 47th | OF Vernon Wells Tor |
| 5 | 50th | C Ivan Rodriguez Det |
| 6 | 71st | OF Andruw Jones Atl |
| 7 | 74th | SP Matt Morris StL |
| 8 | 95th | SP Greg Maddux ChN |
| 9 | 98th | RP Robb Nen SF |
| 10 | 119th | SP Brandon Claussen Cin |
| 11 | 122nd | RP Tim Worrell Phi |
| 12 | 143rd | 1B Jeff Conine Fla |
| 13 | 146th | 2B Aaron Boone Cle |
| 14 | 167th | SP Steve Trachsel NYN |
| 15 | 170th | SP Woody Williams StL |
| 16 | 191st | RP Ugueth Urbina Det |
| 17 | 194th | C Ramon Hernandez SD |
| 18 | 215th | 3B Vinny Castilla Col |
| 19 | 218th | 1B J.T. Snow SF |
| 20 | 239th | RP Lance Carter TB |
| 21 | 242nd | SP Jon Garland ChA |
| 22 | 263rd | SP Kirk Rueter SF |
| 23 | 266th | RP Jose Mesa Pit |
| 24 | 287th | SS Cristian Guzman Min |
| 25 | 290th | 2B Luis Rivas Min |
| 26 | 311th | OF Alex Sanchez Det |
| 27 | 314th | 3B Ty Wigginton Pit |
| 28 | 335th | OF David Roberts Bos |
| 29 | 338th | SP Elmer Dessens Ari |