| Round | Overall | Player |
|---|---|---|
| 1 | 1st | 3B Alex Rodriguez NYA |
| 2 | 24th | RP Keith Foulke Bos |
| 3 | 25th | RP Billy Wagner Phi |
| 4 | 48th | OF Bobby Abreu Phi |
| 5 | 49th | SP Kevin Brown NYA |
| 6 | 72nd | 1B Derrek Lee ChN |
| 7 | 73rd | 1B Frank Thomas ChA |
| 8 | 96th | OF Juan Gonzalez KC |
| 9 | 97th | SP Brandon Webb Ari |
| 10 | 120th | SP Vicente Padilla Phi |
| 11 | 121st | OF Geoff Jenkins Mil |
| 12 | 144th | 2B Placido Polanco Phi |
| 13 | 145th | SP Woody Williams StL |
| 14 | 168th | OF Jeromy Burnitz Col |
| 15 | 169th | C Ramon Castro Fla |
| 16 | 192nd | OF Milton Bradley LA |
| 17 | 193rd | 1B Josh Phelps Cle |
| 18 | 216th | SS Carlos Guillen Det |
| 19 | 217th | 3B Vinny Castilla Col |
| 20 | 240th | SP Cliff Lee Cle |
| 21 | 241st | SP John Thomson Atl |
| 22 | 264th | C Benito Santiago KC |
| 23 | 265th | SP Ted Lilly Tor |
| 24 | 288th | SP Tomo Ohka Mon |
| 25 | 289th | 2B Mark Grudzielanek ChN |
| 26 | 312th | RP Damaso Marte ChA |
| 27 | 313th | SS David Eckstein Ana |
| 28 | 336th | OF Jason Bay Pit |
| 29 | 337th | SP Tony Armas Jr. Mon |