| Round | Overall | Player |
|---|---|---|
| 1 | 7th | OF Vladimir Guerrero Ana |
| 2 | 18th | OF Gary Sheffield NYA |
| 3 | 31st | SS Derek Jeter NYA |
| 4 | 42nd | SP Tim Hudson Oak |
| 5 | 55th | 3B Chipper Jones Atl |
| 6 | 66th | SP Bartolo Colon Ana |
| 7 | 79th | SP Kevin Millwood Phi |
| 8 | 90th | 3B Aramis Ramirez ChN |
| 9 | 103rd | 1B Phil Nevin SD |
| 10 | 114th | SP Mark Buehrle ChA |
| 11 | 127th | OF Ken Griffey Jr Cin |
| 12 | 138th | SP C.C. Sabathia Cle |
| 13 | 151st | 1B Paul Konerko ChA |
| 14 | 162nd | C Victor Martinez Cle |
| 15 | 175th | 3B Corey Koskie Min |
| 16 | 186th | 2B Roberto Alomar ChA |
| 17 | 199th | SP Brian Lawrence SD |
| 18 | 210th | SP Kris Benson NYN |
| 19 | 223rd | RP Dan Kolb Mil |
| 20 | 234th | 3B D'Angelo Jimenez Cin |
| 21 | 247th | RP Billy Koch Fla |
| 22 | 258th | OF Jose Cruz Jr TB |
| 23 | 271st | SP Adam Eaton SD |
| 24 | 282nd | SS Cristian Guzman Min |
| 25 | 295th | 2B Mark DeRosa Atl |
| 26 | 306th | 1B Carlos Pena Det |
| 27 | 319th | C Jason LaRue Cin |
| 28 | 330th | SP Chan Ho Park Tex |
| 29 | 343rd | OF Jay Payton SD |