| Round | Overall | Player |
|---|---|---|
| 1 | 11th | SS Miguel Tejada Bal |
| 2 | 14th | OF Sammy Sosa ChN |
| 3 | 35th | SP Kerry Wood ChN |
| 4 | 38th | 1B Jeff Bagwell Hou |
| 5 | 59th | OF Preston Wilson Col |
| 6 | 62nd | RP Eddie Guardado Sea |
| 7 | 83rd | OF Ichiro Suzuki Sea |
| 8 | 86th | RP Arthur Rhodes Oak |
| 9 | 107th | C Mike Lieberthal Phi |
| 10 | 110th | SP Odalis Perez LA |
| 11 | 131st | OF Pat Burrell Phi |
| 12 | 134th | SP Jarrod Washburn Ana |
| 13 | 155th | SP Miguel Batista Tor |
| 14 | 158th | SP Ben Sheets Mil |
| 15 | 179th | C Paul Lo Duca Fla |
| 16 | 182nd | 3B Jose Valentin ChA |
| 17 | 203rd | 1B Doug Mientkiewicz Bos |
| 18 | 206th | 3B Joe Randa KC |
| 19 | 227th | 2B Junior Spivey Mil |
| 20 | 230th | SP Aquilino Lopez Tor |
| 21 | 251st | SP John Lackey Ana |
| 22 | 254th | OF Raul Mondesi Ana |
| 23 | 275th | RP Jose Mesa Pit |
| 24 | 278th | 3B Pedro Feliz SF |
| 25 | 299th | OF Laynce Nix Tex |
| 26 | 302nd | 2B Tony Womack StL |
| 27 | 323rd | OF Juan Encarnacion Fla |
| 28 | 326th | SP Aaron Harang Cin |
| 29 | 347th | 2B Willie Harris ChA |