| Round | Overall | Player |
|---|---|---|
| 1 | 12th | OF Manny Ramirez Bos |
| 2 | 13th | 1B Richie Sexson Ari |
| 3 | 36th | OF Lance Berkman Hou |
| 4 | 37th | SS Edgar Renteria StL |
| 5 | 60th | 3B Troy Glaus Ana |
| 6 | 61st | OF Garret Anderson Ana |
| 7 | 84th | SP Andy Pettitte Hou |
| 8 | 85th | RP Jason Isringhausen StL |
| 9 | 108th | SP Randy Wolf Phi |
| 10 | 109th | SP Wade Miller Hou |
| 11 | 132nd | C Jason Kendall Pit |
| 12 | 133rd | SP Freddy Garcia ChA |
| 13 | 156th | 2B Luis Castillo Fla |
| 14 | 157th | OF Torii Hunter Min |
| 15 | 180th | SP Jake Peavy SD |
| 16 | 181st | SP Eric Milton Phi |
| 17 | 204th | OF Dmitri Young Det |
| 18 | 205th | 1B Nick Johnson Mon |
| 19 | 228th | SP Gil Meche Sea |
| 20 | 229th | OF Mike Cameron NYN |
| 21 | 252nd | 3B Tony Batista Mon |
| 22 | 253rd | RP Danny Graves Cin |
| 23 | 276th | SP Rocky Biddle Mon |
| 24 | 277th | SP Chris Carpenter StL |
| 25 | 300th | SP Zach Day Mon |
| 26 | 301st | C Michael Barrett ChN |
| 27 | 324th | SS Royce Clayton Col |
| 28 | 325th | 2B Fernando Vina Det |
| 29 | 348th | RP Mike MacDougal KC |