| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | SS Alex Rodriguez Sea |
| 2 | 23rd | 1B Fred McGriff Atl |
| 3 | 26th | C Ivan Rodriguez Tex |
| 4 | 47th | 3B Matt Williams Cle |
| 5 | 50th | 2B Eric Young Col |
| 6 | 71st | P Ismael Valdez LA |
| 7 | 74th | 1B Eric Karros LA |
| 8 | 95th | P Kevin Appier KC |
| 9 | 98th | OF Henry Rodriguez Mon |
| 10 | 119th | OF Tony Gwynn SD |
| 11 | 122nd | P Jaime Navarro ChA |
| 12 | 143rd | P Ricky Bottalico Phi |
| 13 | 146th | OF Andruw Jones Atl |
| 14 | 167th | P Steve Avery Bos |
| 15 | 170th | P Pedro Astacio Col |
| 16 | 191st | P David Wells NYA |
| 17 | 194th | OF Darryl Strawberry NYA |
| 18 | 215th | OF Gregg Jefferies Phi |
| 19 | 218th | P Kenny Rogers NYA |
| 20 | 239th | 3B Russ Davis Sea |
| 21 | 242nd | OF Todd Hollandsworth LA |
| 22 | 263rd | OF Shane Mack Bos |
| 23 | 266th | 1B David Segui Mon |
| 24 | 287th | SS Orlando Miller Det |
| 25 | 290th | C Don Slaught SD |
| 26 | 311th | P Aaron Sele Bos |