| Round | Overall | Player |
|---|---|---|
| 1 | 10th | SP Mark Prior ChN |
| 2 | 15th | OF Manny Ramirez Bos |
| 3 | 34th | RP Keith Foulke Bos |
| 4 | 39th | RP Billy Wagner Phi |
| 5 | 58th | 1B Derrek Lee ChN |
| 6 | 63rd | OF Aubrey Huff TB |
| 7 | 82nd | SP Wade Miller Hou |
| 8 | 87th | SP Woody Williams StL |
| 9 | 106th | 3B Jose Valentin ChA |
| 10 | 111th | SP Livan Hernandez Mon |
| 11 | 130th | 2B Placido Polanco Phi |
| 12 | 135th | SP Jarrod Washburn Ana |
| 13 | 154th | 3B Vinny Castilla Col |
| 14 | 159th | SP Brandon Claussen Cin |
| 15 | 178th | OF Reggie Sanders StL |
| 16 | 183rd | SP Kyle Lohse Min |
| 17 | 202nd | 1B Kevin Millar Bos |
| 18 | 207th | 3B Alex Gonzalez TB |
| 19 | 226th | C Jason LaRue Cin |
| 20 | 231st | 3B Pedro Feliz SF |
| 21 | 250th | 3B Adrian Beltre LA |
| 22 | 255th | OF Raul Mondesi Ana |
| 23 | 274th | 2B Marlon Anderson StL |
| 24 | 279th | SP Brian Anderson KC |
| 25 | 298th | C Ben Molina Ana |
| 26 | 303rd | 1B Ben Broussard Cle |
| 27 | 322nd | SP John Burkett F/A |
| 28 | 327th | SP Jason Jennings Col |
| 29 | 346th | OF Coco Crisp Cle |