| Round | Overall | Player |
|---|---|---|
| 1 | 11th | OF Sammy Sosa ChN |
| 2 | 14th | SP Pedro Martinez Bos |
| 3 | 35th | 1B Jeff Bagwell Hou |
| 4 | 38th | 2B Jeff Kent Hou |
| 5 | 59th | 3B Hank Blalock Tex |
| 6 | 62nd | SP Matt Morris StL |
| 7 | 83rd | OF Richard Hidalgo NYN |
| 8 | 86th | SS Angel Berroa KC |
| 9 | 107th | OF Torii Hunter Min |
| 10 | 110th | SP Derek Lowe Bos |
| 11 | 131st | OF Marlon Byrd Phi |
| 12 | 134th | SP Vicente Padilla Phi |
| 13 | 155th | SP Brad Radke Min |
| 14 | 158th | C Paul Lo Duca Fla |
| 15 | 179th | DH Edgar Martinez Sea |
| 16 | 182nd | SP Tom Glavine NYN |
| 17 | 203rd | OF Corey Patterson ChN |
| 18 | 206th | SS Alex Cintron Ari |
| 19 | 227th | SP Chris Carpenter StL |
| 20 | 230th | 1B Brad Fullmer Tex |
| 21 | 251st | SP Darrell May KC |
| 22 | 254th | 3B Ty Wigginton Pit |
| 23 | 275th | SP Jerome Williams SF |
| 24 | 278th | OF Randy Winn Sea |
| 25 | 299th | SP John Thomson Atl |
| 26 | 302nd | OF Rondell White Det |
| 27 | 323rd | 2B Mark Grudzielanek ChN |
| 28 | 326th | SP Doug Davis Mil |
| 29 | 347th | C Robby Hammock Ari |