| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 1B Jim Thome Phi |
| 2 | 13th | SS Miguel Tejada Bal |
| 3 | 36th | SP Curt Schilling Bos |
| 4 | 37th | SP Mike Mussina NYA |
| 5 | 60th | OF Ichiro Suzuki Sea |
| 6 | 61st | 2B Jose Vidro Mon |
| 7 | 84th | OF Rocco Baldelli TB |
| 8 | 85th | SP Roger Clemens Hou |
| 9 | 108th | OF Ken Griffey Jr Cin |
| 10 | 109th | RP Jorge Julio Bal |
| 11 | 132nd | SP Hideo Nomo LA |
| 12 | 133rd | SP Randy Wolf Phi |
| 13 | 156th | OF Geoff Jenkins Mil |
| 14 | 157th | 1B Shea Hillenbrand Ari |
| 15 | 180th | SP Ben Sheets Mil |
| 16 | 181st | OF Jose Guillen Ana |
| 17 | 204th | 2B Ray Durham SF |
| 18 | 205th | SP Adam Eaton SD |
| 19 | 228th | 1B Josh Phelps Cle |
| 20 | 229th | C Benito Santiago KC |
| 21 | 252nd | SP Jason Marquis StL |
| 22 | 253rd | 3B Casey Blake Cle |
| 23 | 276th | SP Jason Johnson Det |
| 24 | 277th | RP Mike MacDougal KC |
| 25 | 300th | SS Royce Clayton Col |
| 26 | 301st | RP Ugueth Urbina Det |
| 27 | 324th | SP Rodrigo Lopez Bal |
| 28 | 325th | OF Tim Salmon Ana |
| 29 | 348th | C Ben Davis ChA |