| Round | Overall | Player |
|---|---|---|
| 1 | 8th | SS Nomar Garciaparra ChN |
| 2 | 17th | 3B Scott Rolen StL |
| 3 | 32nd | SS Derek Jeter NYA |
| 4 | 41st | C Javy Lopez Bal |
| 5 | 56th | 1B Mark Teixeira Tex |
| 6 | 65th | OF Shawn Green LA |
| 7 | 80th | OF Adam Dunn Cin |
| 8 | 89th | SP Andy Pettitte Hou |
| 9 | 104th | SP Sidney Ponson Bal |
| 10 | 113th | 1B Rafael Palmeiro Bal |
| 11 | 128th | OF Corey Patterson ChN |
| 12 | 137th | SP Jerome Williams SF |
| 13 | 152nd | 2B Ray Durham SF |
| 14 | 161st | SP Jeremy Affeldt KC |
| 15 | 176th | OF Marlon Byrd Phi |
| 16 | 185th | 3B Pedro Feliz SF |
| 17 | 200th | SP Eric Milton Phi |
| 18 | 209th | SP John Thomson Atl |
| 19 | 224th | 3B Sean Burroughs SD |
| 20 | 233rd | OF Jason Bay Pit |
| 21 | 248th | SP Jeff Weaver LA |
| 22 | 257th | SP A.J. Burnett Fla |
| 23 | 272nd | 2B Adam Kennedy Ana |
| 24 | 281st | C Michael Barrett ChN |
| 25 | 296th | 1B Doug Mientkiewicz Bos |
| 26 | 305th | SP Matt Riley Bal |
| 27 | 320th | OF Jose Cruz Jr TB |
| 28 | 329th | 2B Tony Womack StL |
| 29 | 344th | SP Ryan Vogelsong Pit |