| Round | Overall | Player |
|---|---|---|
| 1 | 6th | OF Vladimir Guerrero Ana |
| 2 | 19th | C Jorge Posada NYA |
| 3 | 30th | RP Keith Foulke Bos |
| 4 | 43rd | OF Bobby Abreu Phi |
| 5 | 54th | 3B Mike Lowell Fla |
| 6 | 67th | RP Eddie Guardado Sea |
| 7 | 78th | 1B Derrek Lee ChN |
| 8 | 91st | SP Russ Ortiz Atl |
| 9 | 102nd | SP C.C. Sabathia Cle |
| 10 | 115th | 2B Luis Castillo Fla |
| 11 | 126th | SS Alex Cintron Ari |
| 12 | 139th | 2B Placido Polanco Phi |
| 13 | 150th | SP Darrell May KC |
| 14 | 163rd | 1B Jay Gibbons Bal |
| 15 | 174th | SP Ryan Franklin Sea |
| 16 | 187th | SP Aquilino Lopez Tor |
| 17 | 198th | OF Reggie Sanders StL |
| 18 | 211th | SP Miguel Batista Tor |
| 19 | 222nd | SP Kip Wells Pit |
| 20 | 235th | OF Milton Bradley LA |
| 21 | 246th | C Robby Hammock Ari |
| 22 | 259th | SP Tomo Ohka Mon |
| 23 | 270th | SP Jae Weong Seo NYN |
| 24 | 283rd | 1B Lyle Overbay Mil |
| 25 | 294th | SP Victor Zambrano NYN |
| 26 | 307th | SS David Eckstein Ana |
| 27 | 318th | SP Jeff Suppan StL |
| 28 | 331st | 3B Geoff Blum TB |
| 29 | 342nd | OF Bobby Kielty Oak |