| Round | Overall | Player |
|---|---|---|
| 1 | 1st | 3B Alex Rodriguez NYA |
| 2 | 24th | OF Gary Sheffield Det |
| 3 | 25th | SS Derek Jeter NYA |
| 4 | 48th | 1B Paul Konerko ChA |
| 5 | 49th | 2B Marcus Giles Atl |
| 6 | 72nd | OF Barry Bonds SF |
| 7 | 73rd | OF Ken Griffey Jr Cin |
| 8 | 96th | SP Josh Beckett Bos |
| 9 | 97th | SP Jason Schmidt SF |
| 10 | 120th | RP Trevor Hoffman SD |
| 11 | 121st | RP Eric Gagne LAD |
| 12 | 144th | RP Eddie Guardado Cin |
| 13 | 145th | SP Matt Clement Bos |
| 14 | 168th | OF Cliff Floyd ChA |
| 15 | 169th | SP Matt Morris SF |
| 16 | 192nd | OF Jeremy Hermida Fla |
| 17 | 193rd | 1B Nick Johnson Was |
| 18 | 216th | SP Chris Capuano Mil |
| 19 | 217th | 1B Nomar Garciaparra LAD |
| 20 | 240th | C Rod Barajas Tex |
| 21 | 241st | 3B Ryan Zimmerman Was |
| 22 | 264th | SP Jason Marquis ChA |
| 23 | 265th | SS David Eckstein StL |
| 24 | 288th | 2B Orlando Hudson Ari |
| 25 | 289th | SS Hanley Ramirez Fla |
| 26 | 312th | C Johnny Estrada Mil |
| 27 | 313th | OF Victor Diaz NYN |
| 28 | 336th | SP Horacio Ramirez Atl |
| 29 | 337th | SP Jaret Wright Bal |