| Round | Overall | Player |
|---|---|---|
| 1 | 7th | DH Travis Hafner Cle |
| 2 | 18th | 1B Ryan Howard Phi |
| 3 | 31st | OF Grady Sizemore Cle |
| 4 | 42nd | 2B Jorge Cantu TB |
| 5 | 55th | 3B Eric Chavez Oak |
| 6 | 66th | SP Rich Harden Oak |
| 7 | 79th | SP Mark Buehrle ChA |
| 8 | 90th | SP Barry Zito Oak |
| 9 | 103rd | OF J.D. Drew LAD |
| 10 | 114th | SP Noah Lowry SF |
| 11 | 127th | OF Coco Crisp Bos |
| 12 | 138th | OF Kevin Mench Mil |
| 13 | 151st | SP Mark Prior ChN |
| 14 | 162nd | SP Kelvim Escobar LAA |
| 15 | 175th | RP Bob Wickman Atl |
| 16 | 186th | SP Ervin Santana LAA |
| 17 | 199th | OF Jason Lane Hou |
| 18 | 210th | RP Brian Fuentes Col |
| 19 | 223rd | SS J.J. Hardy Mil |
| 20 | 234th | C Ryan Doumit Pit |
| 21 | 247th | OF Matt Murton ChN |
| 22 | 258th | SP John Thomson Atl |
| 23 | 271st | SP Roger Clemens Hou |
| 24 | 282nd | 3B Joe Crede ChA |
| 25 | 295th | 2B Jose Lopez Sea |
| 26 | 306th | RP Joey Devine Atl |
| 27 | 319th | C Danny Ardoin Bal |
| 28 | 330th | 1B Tony Clark Ari |
| 29 | 343rd | SP Paul Maholm Pit |